If anything says Supermans' relationship with Wonder Woman is wrong it's this. Erasing and/or fading the protector of time (and father to THE Time Master) from the present. You may think this isn't Superdickery but come on, do you really think Clark would have stopped if he knew?
Look at that smile when Booster asks if he's supposed to leave. That's the look of a man who's already daydreamed of punting Booster out of his city like a football.